ERROR 127: ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory

Question

[freuv]

Hi,

I am running ABYSS but seem to be running into issues when multithreading -- please see error message below:

ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory make: * [cam4-1.fa] Error 127

Any guidance would be much appreciated!

Thank you.

[Pierre Lindenbaum]

try to set the LD_LIBRARY_PATH https://stackoverflow.com/questions/4581305/

Answer 1

[colindaven]

The conda version is very easy to install.

Answer 2

[freuv]

Hi everyone,

Thank you for your help. I re-compiled AbySS using the same version of MPI I was trying to run AbySS with, and it pulled up the correct libmpi.

Resolved!