Can't find ABYSS-P after compiling

Question

[freuv]

Hi,

I am unable to find ABYSS-P after compiling both ABYSS and OpenMPI.

Please advise. Thank you!

[Medhat]

was there any error? in compilation? did you echo $PATH? or use which "your tools" or use locate command

[freuv]

Hi @Medhat,

Thank you for your message. I re-compiled --with-openmpi and ABYSS-P was subsequently created.

However, I am running into an issue with ABYSS-P when multithreading as follows:

'ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory' make: * [cam4-1.fa] Error 127

[Medhat]

use shared library

export LD_LIBRARY_PATH=/PATH_TO_your_LIB/lib:$LD_LIBRARY_PATH https://stackoverflow.com/a/4581396/1798298

Answer 1

[colindaven]

Use bioconda to install and save yourself the hassle?

Answer 2

[freuv]

Hi everyone,

Thank you for your help. I re-compiled AbySS using the same version of MPI I was trying to run AbySS with, and it pulled up the correct libmpi.

Resolved!