Question

for transcript analysis, STAR or Hisat ?

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7.1 years ago

XBria ▴ 90

Hi,

Which aligner to use ? and what is the reason ?

Could you share a link to an article that compares them ?

RNA-Seq alignment • 917 views

ADD COMMENT • link updated 7.1 years ago by GenoMax 148k • written 7.1 years ago by XBria ▴ 90

score 1 · Accepted Answer · 2017-11-22

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7.1 years ago

GenoMax 148k

ADD COMMENT • link 7.1 years ago by GenoMax 148k

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This is exactly what I was looking for !

Thank you very Much !

ADD REPLY • link 7.1 years ago by XBria ▴ 90

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Dear genomax,

Could you please also share some links to the papers in which STAR gives better results than Hisat ?

Thanks in advance

ADD REPLY • link 7.1 years ago by XBria ▴ 90