What is the algorithm used by UCSC lift over tool?
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7.0 years ago

I want to write my own tool for liftover between two genome assemblies. Please let me know how the chain file is used to convert the coordinates?

sequencing alignment Assembly • 2.2k views
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Chains/nets are explained here. Additional practical information on this page.

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You can read CrossMap algorithm description, and even better, examine its source.

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