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7.1 years ago
Javad
▴
150
Hi everybody
I am trying to use htseq for counting the number of reads aligned to genomic features. I use the following command:
htseq-count -s no -t exon -i gene_id --additional-attr=gene_name Alignment-files annotation-files
After running the command the read count table is printed on the terminal screen but there is no spreed sheet saved in my current directory. where can I find the output spreadsheet of htseq-count command?
Best
Thanks a lot. It was really helpful :)