Fix Mate Information to PE library

Question

[thaisenayane]

Hello, I have a paired end library, and I want to fix them after my BWA-MEM alignment on galaxy, however I used "FixMate information" in Picard, this is a good option? or Should I try anything else? maybe "Add or Replace Read goups also in picard"?

Thanks

[Pierre Lindenbaum]

I have a paired end library, and I want to fix them after my BWA-MEM alignment on galaxy

why do you think you have to to this ?

Should I try anything else? maybe "Add or Replace Read goups also in picard"?

this is not related to 'fixing-mates'

[BioinfGuru]

what do you think fixing is doing?