GRCh37/hg19 human genome sequences from NCBI

Question

[KVC_bioinfo]

Hello all,

How can I download one single file containing all chromosomes sequences of GRCh37/hg19 for humans NCBI?

Thank you.

[GenoMax]

You are command line savvy based on your past posts. You must know that it is as simple as doing a cat chr*.fa > genome.fa. hg19 files right from source.

[KVC_bioinfo]

Thank you very much. I am learning and I am a new student in bioinformatics. Possibly due that reason my post my sound naive.

[KVC_bioinfo]

Does the link you gave is GRCh37/hg19 from NCBI?

[GenoMax]

Human genome builds are released by Genome Reference Consortium of which is NCBI is one member. If you must get it from NCBI then use this page.

[KVC_bioinfo]

Thank you very much!

Answer 1

[Jean-Karim Heriche]

You can get it from the Ensembl FTP site. Be sure to have a look at the README file to identify what you want.

[KVC_bioinfo]

I wanted to get that from NCBI source.