small molecule alignment/superimposition over docked pose

Question

[amoltej]

Hi,

I have generated docking poses using chimera and autodock vina. I have a separate different type glucosinolate molecule which I want to superimpose on the ligand of docked pose. Can somebody suggest me any software that I can use for this purpose? I have tried small molecule alignment function in discovery studio visualizer but it does not allow to superimpose the structure

Answer 1

[BioinfGuru]

I would try Pymol with the Autodock plugin. Load the molecules and use the "align" command to superimpose them.