Trying to make metaphlan2 work with krona for school project; need fastq files to test with.

Question

[Berghopper]

referably I would need old and new versions of the fastq format for both paired and single-ended data. I already searched ncbi but is a pain to find anything remotely useful. Does anybody have a few files that they know will work and give a comprehensible result with metaphlan2? It does not need to be perfect data in any way, just something that doesn't spit out "unclassified 100" for all the data...

Answer 1

[h.mon]

Synthetic genomes used for the paper, or the files from a Metaphan tutorial are good candidates.