How do I make a schema with all described variants within a gene?

Question

[spanakorice]

Hello. I would like to make a graphical representation of a transcript with all known variants. Something similar to image below.

Would anyone know how this can be done (apart from the "add custom tracks" of UCSC genome browser)?

Thank you in advance.

[ATpoint]

Well, 99.9% sure that this figure was made in powerpoint.

[GenoMax]

Plotting a single transcript with ggbio

Answer 1

[Pierre Lindenbaum]

I wrote a uniprot->SVG interface for a colleague. http://lindenb.github.io/pages/uniprot/paintsvg.html

you give a uniprot ID and fill a list of variant in a text area. You can later export and open it in inkscape.

Answer 2

[WouterDeCoster]

This is also a convenient tool to quickly get such an image for human variant data: MutationMapper

[GenoMax]

Only for human data?

[WouterDeCoster]

Oh yeah, that's probably the case (clarified).

[spanakorice]

Thank you. MutationMapper seems to do what I was searching for! I still have to try with my data.