when doing GSEA
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7.0 years ago
mysskks • 0

I try to do GSEA. Therefore, I downloaded mRNA data files(GCT) from firebrowse. Then i did ranknormalization by using Gene pattern. After that, i opened GCT files by using EXCEL and figure out that tumor and normal tissue RNA data are mixing in. So can i exclude the normal tissue data ?? Then do GSEA?? or Include the tumor and normal tissue RNA data. Then do GSEA??

Thank for reading my question Pleas give comments please.

rna-seq RNA-Seq • 2.0k views
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It is really hard for me to understand your question. Please refer to the guide on how ask questions on biostars

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Thank you for your comments. I will read this and then question again.

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