Visualization software for large variations

Question

[rse]

Hi,

Is there good visualization software for large variations? I am aware of IGV but i am having difficulty in estimating the large variations. Also what is insert size and how does it correlate to the size of the deletion/insertion?

Thanks

[rse]

Thanks, but i have to do from alignment data (.bam files)

Answer 1

[cpad0112]

Circos

Answer 2

[Ram]

Yes, you can use junction files obtained along with alignment files by using available alignment tool. After that you can import junction files for obtaining Circos plot by using Circos software: http://circos.ca/software/

Answer 3

[rse]

Ok, will try. Thank you