bsseq fisherTest result

Question

[cvu]

Hi all,

I've performed fisherTests() function of bsseq bioconductor package for two samples since I've only one replicate for each samples. but fishertest result gives only two columns p.value and log2OR and I want to know its corresponding chromosome and position information. also I want to filter and plot fisherTest result.

also, How do I find DMRs from FisherTest results?

Thanks in advance!! Any help appreciated!!

[Fabio Marroni]

What command did you exactly issue? This information might allow some expert (not me!) helping you better.

Probably you have one pvalue for each input line you gave to the command, in the same order; you might check that.