[Waiting on OP] perl script to grep a part of header from fasta seq file

Question

[h_asma]

Hello

I want a perl script to extract name of cis regulatory module ("Sry-alpha_CANBG ") chromosome number ("2R") and coordinate (2377048_2377297) in a tab separated format from this header

>Sry-alpha_CANBG:Dmel:3R:25866821-25867071_2R_2377048_2377297
 ^-------------^                           ^^ ^-------------^

Output should look like this:

Sry-alpha_CANBG   2R   2377048   2377297

I have tried this

grep "^>"  filename.fasta

but this returns all the headers. And as theses are variables I can't use specific pattern to find and replace it with nothing. Any suggestions would be appreciated

Thanks

[GouthamAtla]

As you are a new user, you should know that first you need to try something yourself, in awk/perl or whatever language, and if you still cant figure out, people help in modifying your script/command.

People here doesn't provide ready-made scripts as per your requirements.

There are many many posts on this forum handling fasta headers. So check them.

[Pierre Lindenbaum]

I want a perl script

what have you tried ?

[Ram]

Hello hasiba.asma!

I'm closing your post until you add information on what you've tried. Once you add that information, I will open the post so people can answer your question.