Recommend tools to Identify splice site regulatory elements

Question

[olechnwin]

Hi,

Can anyone recommend tools that are specifically developed to identify splicing regulatory elements (SREs)? Would like to know what tool is commonly used for this purpose. I found CoSREM. However, it doesn't seem to be commonly used by researchers.

Thanks!

[natasha.sernova]

See the following articles. Some of the mention such tools.

Article from 2003:

https://academic.oup.com/nar/article/34/suppl_2/W429/2505739

Article from 2006:

https://academic.oup.com/nar/article/34/suppl_2/W429/2505739

Article from 2016

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4526142/

Article from 2017

https://link.springer.com/article/10.1007/s00439-017-1790-y

[olechnwin]

Thank you! I will take a look at these articles. Is there a particular tool you've used?

Answer 1

[natasha.sernova]

Recently I have seen this one:

http://www.gjcrt.org/volumes/volumes%202/5.Splice%20Site%20%20Prediction%20A%20%20Review%20%20Of%20%20Progress%20In%20Hard%20Vs%20Soft%20Computing%20Techniques.pdf