No peaks present in track when opening a .bedGraph file on IGV

Question

[euanmcdonn]

Hi all,

I'm trying to visualize some CLIP-seq data (RNase E-K12 transcriptome) on IGV as a bedGraph file, however everytime I upload it I just get a flat line with no obvious peaks. I've checked the data and although the would-be peaks are small in magnitude there is definite variation.

Whats weird is it works fine on UCSC but the problem persists for IGV.

Thanks for your time Euan McDonnell

Answer 1

[Hussain Ather]

If you right-click on the filename on the left column, you can select "Group Autoscale" if you think the scaling is an issue.