Tools for identifying genome wide copy number variation in plants

Question

[aaron.agri]

Can anyone suggest me a good tool to identify genome-wide copy number variation in genome sequence data? I have seen few tools which identify comparatively Eg: Tumor and non -tumor cell. Please suggest a tool which identifies using bed or bam depth file.

Thank you

Answer 1

[theobroma22]

finding copy number variation from bam file.

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