bash loop to align 366 RNAseq samples in individual folders
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6.9 years ago
ATCG ▴ 400

Hi, I have 366 RNAseq samples, reads for each sample are located in individual folders with the following name structure:SAME-DIFFERENT. I would like to write a loop to align all samples using the STAR aligner. Any help is deeply appreciated.

RNA-Seq Bash Unix STAR alignment • 1.7k views
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