Getting full list for DEGs in Noiseq

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6.9 years ago

mubangafchama ▴ 10

Hello everyone

I have downloaded NOISEQ and managed to import the data and run my analysis for differentially expressed genes. However, I can't find a way to see/download the entire file of results. All I get is a snippet showing me the M and D results for for the first 6 rows (I have 21000 rows). This is the code I used > head(mynoiseq@results[[1]]) (it's in R). Will appreciate any help.

Here's a link to the NOISEQ package I downloaded from Bioconductor http://www.bioconductor.org/packages/release/bioc/html/NOISeq.html

RNA-Seq • 1.7k views

ADD COMMENT • link updated 18 months ago by Ram 44k • written 6.9 years ago by mubangafchama ▴ 10

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head by default returns 6 rows. If you want to see more then use a number like (in this case 10)

head(mynoiseq@results[[1]], 10)

ADD REPLY • link 6.9 years ago by GenoMax 147k

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Thank you so much Genomax.

ADD REPLY • link 6.9 years ago by mubangafchama ▴ 10

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