Annotation of taxonomy information in phylogeny tree
2
1
Entering edit mode
6.9 years ago

Hello,

I have a phylogenetic tree with 85 species. I wish to annotate them with 'Class or phylum' information as branch label. Can anyone suggest a tool available ? ofcourse not with paint ! Is it possible in ETE toolkit ?

Thanks,

AP

phylogeny tree annotation ETE • 2.4k views
ADD COMMENT
1
Entering edit mode
6.9 years ago
Hussain Ather ▴ 990

Try EvolView http://www.evolgenius.info/evolview/

ADD COMMENT
0
Entering edit mode
6.9 years ago
jhc ★ 3.0k

If you have the NCBI taxid code for each species, yes, it is possible to do it with ETE. Check this part of the documentation: http://etetoolkit.org/docs/latest/tutorial/tutorial_ncbitaxonomy.html http://etetoolkit.org/documentation/ete-ncbiquery/

ADD COMMENT

Login before adding your answer.

Traffic: 2137 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6