How to get a list of genes and interactions from KEGG signaling pathways map?

Question

[zeyu.wang.ustc]

I want to get a list of genes and interactions from the maps.

http://www.kegg.jp/kegg-bin/highlight_pathway?scale=1.0&map=map04630&keyword=stat

However, it looks like the rest api is not working (http://rest.kegg.jp/link/genes/hsa05223 )

Any else ways to do that?

Answer 1

[theobroma22]

You can download the KGML/XML file for each pathway of interest from KEGG.

[zeyu.wang.ustc]

how to do that? .........................................

[theobroma22]

Well, you can do it manually from the KEGG website...it should be in the list to the right of the pathway. Alternatively, you can use the xml package in R if you require all pathways for your taxid of interest. Help is out there!