How to tell if a region is low complexity?

0

Entering edit mode

6.9 years ago

Dayna ▴ 50

Hi everyone

how to identify if the region is low complexity ? I used the genome browser in the attached image, but it seems to me it is not low complexity. I am interested in human. how do you think? need to double check my understanding.

https://ibb.co/mdeOMm

Thanks

low complexity region • 3.0k views

ADD COMMENT • link 6.9 years ago by Dayna ▴ 50

0

Entering edit mode

I think it's marked as SINE sequence

ADD REPLY • link 6.9 years ago by Asaf 10k

0

Entering edit mode

Thanks. So SINE region is a low complexity region, right?

ADD REPLY • link 6.9 years ago by Dayna ▴ 50

0

Entering edit mode

As @Asaf indicated this region is covered by a SINE. Full list of repeats is here.

enter image description here

ADD REPLY • link 6.9 years ago by GenoMax 147k

0

Entering edit mode

I want to know is a SINE a low complexity as it is repeats too? I am sorry if it is a naive thing. But I am very new?

ADD REPLY • link 6.9 years ago by Dayna ▴ 50

0

Entering edit mode