ClustAGE error on Linux - "Support directory 'bin' is not present"

Question

[s.pidcock94]

I'm new to using Linux, and I'm trying to run ClustAGE through the command line. As per the Read Me, I've installed bwa and phylip (I think correctly).

When I try and run ClustAGE using the following command:

perl ClustAGE.pl -f AGE_list.txt

I get the following error:

ERROR: Support directory 'bin' is not present in /home/sara/Bioinformatics_programs/ClustAGE.linux.v0.7.7/bin

In that bin folder I've copied the following:

AGE_list.txt
blastn
bwa
ClustAGE.pl
makeblastdb
neighbor
retree
seqboot

Not too sure what I'm missing. Any help would be greatly appreciated.

[ThulasiS]

Hi

How can I visualize heat map on iOTL? Did you get the results for your data? I am having trouble in visualization part.

Answer 1

[vimalkvn]

The ClustAGE.pl script is looking for a bin directory in the same path where it is located. If you move ClustAGE.pl and AGE_list.txt to /home/sara/Bioinformatics_programs/ClustAGE.linux.v0.7.7/ and then run the command again, it should work.

[s.pidcock94]

Thank you! It worked perfectly!