Entering edit mode
7.1 years ago
majeedaasim
▴
60
I have a fastq file to run TRinity on it. BUt I am getting an error which arises due to the following problem
HWI-ST499:111:D0G94ACXX:6:2203:18045:47806_forward/1
CACCCATCTGAGCTAATGTGCCCCATTTATTCTCACGTTATCAAACCTACAAAGGCCACTTCTCTCCAACTCCTCACTTCACCTTAGTGCAATCGGTAGAC
+
CCCFFFFFHHHHHJJJJJGJJJJJJJJJIJJIJJIGGIIIJIGGIHIIJJJGIFDGGIJJJIJIJJJIJJIJHHHHHHFFFDFDEEEEEDDCCDDBB@BD>
There appears "_forward" in line one in read 1 and "_reverse" in read 2 This is causing the problem. HOw could I delete "_forward" and "_reverse" from the read1 and read2 respectively. ? THanks