In a RNA-Seq project, I have 10 samples, 2 each from 5 patients. I would like to make sure the patients or sample pairs were labeled properly and that there was no mix up.
I used the counts from HT-Seq to generate MDS and scatter plots to assess them. The plots suggest, there might be a mix up.
But I wanted to know if there are tools for such analysis, which take in FastQ or BAM files.
Any suggestions appreciated. Thanks!
That's the kind of tool I was looking for. Thanks!