SRA file download from NCBI
0
1
Entering edit mode
6.9 years ago

Hi,

I am trying to download SRA file from NCBI-SRA database, But unable to locate download option there, I tried using SRA Toolkit but it failed with an error of not finding that file... can anyone suggest me any other option to download those file...

prefetch SRR000001
`Maximum file size download limit is 20,971,520KB

2018-01-19T17:49:37 prefetch.2.3.5 err: error unexpected while resolving tree within virtual file system module - failed to resolve accession 'SRR000001' - Obsolete software. See https://github.com/ncbi/sra-tools/wiki ( 406 )

Redirected!!!

2018-01-19T17:49:38 prefetch.2.3.5 err: name incorrect while evaluating path within network system module - Scheme is 'https'
2018-01-19T17:49:38 prefetch.2.3.5 err: path not found while resolving tree within virtual file system module - 'SRR000001' cannot be found.

kunal@kunal-CELSIUS-M740Bpower:~/Downloads$ fastq-dump -X 5 -Z SRR390728
2018-01-19T17:50:43 fastq-dump.2.3.5 err: error unexpected while resolving tree within virtual file system module - failed to resolve accession 'SRR390728' - Obsolete software. See https://github.com/ncbi/sra-tools/wiki ( 406 )

Redirected!!!

2018-01-19T17:50:44 fastq-dump.2.3.5 err: name incorrect while evaluating path within network system module - Scheme is 'https'
2018-01-19T17:50:44 fastq-dump.2.3.5 err: item not found while constructing within virtual database module - the path 'SRR390728' cannot be opened as database or table`
RNA-Seq SRA FILE • 4.4k views
ADD COMMENT
1
Entering edit mode

Update your sra toolkit . It's too old! https://github.com/ncbi/sra-tools

ADD REPLY
1
Entering edit mode

Get the fastq data directly from EBI-ENA.

ADD REPLY
0
Entering edit mode

thankyou it worked...

ADD REPLY

Login before adding your answer.

Traffic: 2275 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6