Entering edit mode
6.8 years ago
ZheFrench
▴
590
When you use biomart you can get 1-based TSS start coordinate. If you want to transform this coordinate to 0-based format you need to remove 1, whatever the strand is , right ?
If strand + , TSS is chr11 48488717 coordinate in biomart. If you want bed format, it will be :
chr11 48488716 48488717 name signalValue +
If strand - , TSS is chr11 64879712 coordinate in biomart. If you want bed format, it will be :
chr11 64879711 64879712 signalValue 0 -
yes
Move to an answer? Seems like an answer to me.... : )