Cufflinks analysis for transcriptome assembly
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6.8 years ago
qudrat ▴ 100

Hello all, I have six gtf files from six different sample and I want to merge all these six files to produce non-redundant set of transcripts. The gtf files were produced from Cufflinks.

RNA-Seq alignment • 1.1k views
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Go ahead with the cufflinks pipeline.. use Cuffmerge

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As per the above; however, Cufflinks is outdated and has been superceded by Stringtie, produced by the same group.

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