Packages/modules for CNV, Indels, SNPs analysis
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6.8 years ago
Qingyang Xiao ▴ 160

Hello! Can somebody kindly recommand some common and classical packages for targeted sequencing analysis of CNVs, Indels and SNPs?

Thank you again.

snp R sequence alignment genome • 1.5k views
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Hi- Are you interested in somatic variants (e.g. tumour vs normal detection) or germline variants (i.e. sample vs reference genome)? Also, when you say "analysis" do you mean going from raw data like fastq or bam files to detection and annotation? Or you have in mind some more specific analysis?

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6.8 years ago
geocarvalho ▴ 390

See this repository:

ThousandVariantCallersRepo

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