Hello guys,
I have a multiFASTA file with DNA (nucleotide) sequences and I want to convert these sequences to protein (AA) sequences. I need to do this conversion because MEDpipe (a webtool) apparently only accepts FASTA file with AA sequences (I presume), because I keep getting errors when I submit the file. Since this multiFASTA file has over 7000 sequences, it would be really time consuming to translate one sequence each time (most webtools I've found only accepts one sequence per time). Is there any way to do this? Here is an example of the file I have:
>Proteus_mirabilis_ARLG2970_2781
ATGGAGACAGGTACAGTAAAGTGGTTCAATAATGCTAAGGGCTTTGGTTTTATTACCCCAGCAAACGGTG
GCGAAGATATTTTTGCCCACTATTCAACAATTAGAATGGAAGGCTACCGCACACTTAAAGCGGGGCAGAA
AGTTAATTATAGCACGATAAAAGGGCCTAAAGGTGACCATACTGACCTTATCATTCCTATCATTGAATAG
>Proteus_mirabilis_ARLG2970_0131
ATGTCTGACAAAATGAAAGGTCAAGTTAAGTGGTTCAACGAGTCTAAAGGCTTTGGTTTTATTACTCCAG
CAGACGGAAGCAAAGACGTATTCGTTCACTTTTCTGCCATTCAAGGTAACGGTTTCAAAACTCTGGCTGA
AGGTCAGAACGTAGAATTCACAATTGAAAACGGTGCAAAAGGTCCAGCAGCAGCTAACGTAACAGCTCTG
TAA
>Proteus_penneri_ATCC35198_1543
TTACAGAGCAGTTACGTTAGCAGCTGCTGGACCTTTTGCACCGTTTTCAATTGTGAATTCTACGTTCTGA
CCTTCAGCCAGAGTTTTGAAACCGTTACCTTGAATGGCAGAAAAGTGAACGAATACGTCTTTGCTTCCGT
CTGCTGGAGTAATAAAACCAAAGCCTTTAGACTCGTTGAACCACTTAACTTGACCTTTCATTTTGTCAGA
CAT
>Proteus_vulgaris_FDAARGOS366_2819
TTAGAGAGCCACCACGTTGCCTGCTGCTGGGCCTTTCATACCATTTTCCATGGTGAATGAAACTTGTTGC
CCTTCAGCTAATGTTTTGAAGCTATCACTTTGGATTGCAGAGAAATGTACGAATACATCTTTGCTGCCAT
CAGCTGGAGTAATAAAACCAAAACCTTTACCTTCATCGAACCATTTTACTGTACCAGTCATTGTATTAGA
CAT
>Proteus_mirabilis_ARLG2970_2695
TTACAGAGCGATTACGTTCGCTGCTGCAGGGCCTTTAGCGCCATTTTCAATAGAAAATGAAACTTCTTGG
CCTTCTTTCAGTGACTTGAAGCTTTCACTTTGGATCGCTGAAAAGTGTACGAATACGTCTTTGCTACCGT
CTTTAGGAGTGATAAAACCGAAGCCTTTATCATCGTTAAACCATTTTACTGTACCAGTCATTGTATTAGA
CAT
For future reference: highlight text you want to
code
and then click on the101
button in editor window to format it correctly.Thank you for the tip, I'm new to the community so I'm still learning, but I'll apply this knowledge now in my future posts!