What genome assembler to choose for an unpaired FASTQ data derived from a Birch chloroplast?

Question

[oxfordsoccer]

What genome assembler to choose for an unpaired FASTQ data derived from a Birch chloroplast?

And other tools for pre- and post-processing also

File type Conventional base calls Encoding Sanger / Illumina 1.9 (actually Ion Torrent data) Total Sequences 376768 Sequences flagged as poor quality 0 Sequence length 5-376 %GC 36

[GenoMax]

You may want to try tadpole.sh from BBMap suite. It does well with small genomes. See guide here.

[Michael]

Careful with this user.

Answer 1

[Asaf]

I'll go with SPAdes, try it with and without --meta