tools for Population branch statistics (PBS)

Question

[SOHAIL]

Hi,

Can anyone please suggest a tool/script for calculating Population Branch statistics (PBS) test scores for large number of variant sites from NGS data set (i.e. VCF files)?

Regards sohail

Answer 1

[GabrielMontenegro]

Try ANGSD:

http://www.popgen.dk/angsd/index.php/Pbs