Entering edit mode
6.9 years ago
utsafar
▴
80
I am developing a database for single-copy genes.
To test my methods and parameters I need some RNA-Seq data sets in Arabidopsis. I wonder how to choose the most appropriate data sets for my work among thousands of data sets published for Arabidopsis. These thousands of data sets make me confused and I am not sure that a data set I choose to work on, is the best data set or not? Are there any reference data sets that I can use for my work? or I have to search databases and finally find data sets that are suitable for my research?
For my case I need some trust-able RNA-Seq data sets in Arabidopsis in 3 different tissues in 3 different life stages.
Not an answer but you may find this resource, which is supported by the J Craig Ventor Institute and the University of Cambridge, useful: https://www.araport.org/
Other than that, it's really just about searching for the right study via, for example:
Currently I am using J CRAIG VENTER INSTITUTE data sets obtained from EBI ENA for my work. But I said may be there is some (other) reference RNA-Seq data sets. Thank You
You can have look at Encode . Hope this helps you out.