Cufflinks and StringTie

Question

[qudrat]

Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to see the common transcripts between these two software.

Answer 1

[Arup Ghosh]

Compare the list of the transcript from both of the outputs with R/Python or just use jvenn with the list of transcripts.

Answer 2

[andrew.j.skelton73]

use bedtools