SNP Positioning on a Gene

Question

[kavyajayanthan]

I need to plot SNPs on a particular gene and visualize it (like a gene map), just with better clarity. I tried ensembl and UCSC Genome, but is there some other more efficient way?

[Denise CS]

What do you mean by efficient way? What is the format of your list of SNPs? Is it a BED file?

Answer 1

[colindaven]

Have a look at snpEff or Ensembl VEP