Dear All,
I'm working with ssh, and in this ssh server galaxy is running. My question is, how can i stop this galaxy server, make an update en restart this server.
I thought is was something like paster..
Thanks,
Lisanne
The galaxy process is:
python ./scripts/paster.py serve universe_wsgi.ini
You can find the process by
ps -ef| grep universe
then kill the process via kill (process number) or if that fails use the -9 flag for kill (try without -9 first as the -9 flag will not allow any child processes to finish cleanly)
However it is much better to use the galaxy daemon to avoid all this:
When you run galaxy, cd to the directory and type
./run.sh --daemon
To stop it, again cd into the directory and, as the same user who ran the previous command, type
./run.sh --stop-daemon
If you find the galaxy process - by typing ps aux | grep galaxy. Then you can kill that process by typing kill processID.
e.g.
$ps aux | grep galaxy $username 85997 0.9 0.0 2435116 532 s001 R+ 10:26am 0:00.01 galaxy
The second column is the process ID. So type: $kill -9 85997 to kill that process.
Updates are usually managed by programs like apt, yum etc, and don't usually require a reboot unless the kernel is being updated.
In one line:
pkill -f 'python ./scripts/paster.py serve universe_wsgi.ini'
pgrep is the same but for grepping instead of killing processes...
I use "top" command to see the ruining process, then you can press the letter "K" and write the PID of the process that yo want to kill.
To kill galaxy, you can kill python. For example:
geparada@bio-linux$ top
top - 16:06:13 up 3:28, 3 users, load average: 1.05, 0.93, 0.90
Tasks: 198 total, 1 running, 197 sleeping, 0 stopped, 0 zombie
Cpu(s): 5.7%us, 0.7%sy, 0.0%ni, 93.4%id, 0.1%wa, 0.1%hi, 0.0%si, 0.0%st
Mem: 1980968k total, 1935844k used, 45124k free, 191828k buffers
Swap: 1750280k total, 0k used, 1750280k free, 553892k cached
PID to kill: 8976
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
3295 geparada 20 0 323m 224m 25m S 19 11.6 43:23.59 npviewer.bin
3265 geparada 20 0 774m 274m 33m S 4 14.2 19:28.94 firefox-bin
1769 root 20 0 411m 120m 80m S 2 6.2 17:09.97 Xorg
4943 geparada 20 0 339m 32m 17m S 1 1.7 0:47.23 filezilla
85 root 20 0 0 0 0 S 0 0.0 0:03.66 kondemand/1
2876 geparada 20 0 239m 31m 7764 S 0 1.6 1:32.06 compiz
3676 geparada 20 0 223m 24m 11m S 0 1.2 0:12.21 gnome-terminal
8851 geparada 20 0 19224 1496 1072 R 0 0.1 0:00.32 top
8976 geparada 20 0 395m 83m 5844 S 0 4.3 0:12.72 python
1 root 20 0 23828 2128 1300 S 0 0.1 0:01.02 init
2 root 20 0 0 0 0 S 0 0.0 0:00.01 kthreadd
3 root RT 0 0 0 0 S 0 0.0 0:00.01 migration/0
4 root 20 0 0 0 0 S 0 0.0 0:01.23 ksoftirqd/0
5 root RT 0 0 0 0 S 0 0.0 0:00.00 watchdog/0
6 root RT 0 0 0 0 S 0 0.0 0:00.01 migration/1
7 root 20 0 0 0 0 S 0 0.0 0:00.98 ksoftirqd/1
8 root RT 0 0 0 0 S 0 0.0 0:00.00 watchdog/1
9 root RT 0 0 0 0 S 0 0.0 0:00.01 migration/2
10 root 20 0 0 0 0 S 0 0.0 0:05.00 ksoftirqd/2
11 root RT 0 0 0 0 S 0 0.0 0:00.00 watchdog/2
12 root RT 0 0 0 0 S 0 0.0 0:00.02 migration/3
13 root 20 0 0 0 0 S 0 0.0 0:01.06 ksoftirqd/3
14 root RT 0 0 0 0 S 0 0.0 0:00.00 watchdog/3
15 root 20 0 0 0 0 S 0 0.0 0:00.14 events/0
16 root 20 0 0 0 0 S 0 0.0 0:00.11 events/1
17 root 20 0 0 0 0 S 0 0.0 0:00.16 events/2
18 root 20 0 0 0 0 S 0 0.0 0:00.15 events/3
19 root 20 0 0 0 0 S 0 0.0 0:00.00 cpuset
20 root 20 0 0 0 0 S 0 0.0 0:00.00 khelper
21 root 20 0 0 0 0 S 0 0.0 0:00.00 async/mgr
22 root 20 0 0 0 0 S 0 0.0 0:00.00 pm
24 root 20 0 0 0 0 S 0 0.0 0:00.01 sync_supers
It's a very visual and simple way to kill a process.
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version 2.3.6
isn't it Ctrl-c ? I think you would get faster responses if you drop this pure technical question in http://stackoverflow.com/
CTRL-C does not work in Galaxy's case.