Ideas to plot several enrichment results (BP) in one

Question

[lessismore]

Hey all, searching for ideas and advices. i have 4 of enrichment results for biological processes. They should be relatively different from each other but i expect a certain number of categories to overlap between each other. My idea was indeed plotting all results in a comprehensive way, in order to show the overlapping categories (storing their enrichment folds), and also showing the "private" categories from each result. any idea or suggestion will be much appreciated

Answer 1

[Kevin Blighe]

Something like this should be just fine (this is recent code that I pieced together for a project):

This is built on top of the ComplexHeatmap package in R, with much customisation by myself. If it looks good, then I can guide you further with code examples. I have masked the gene names just to protect information.

Kevin

[lessismore]

Hi Kevin, it looks very nice, thanks i would i appreciat!

[Kevin Blighe]

Let me see if I can find time later.

[Kevin Blighe]

Buenos días, I have posted a tutorial here: Clustering of DAVID gene enrichment results from gene expression studies

[lessismore]

muchisimas gracias tio! :) you're my idol i guess

[Kevin Blighe]

De nada - nos vemos

[Kevin Blighe]

You're my idol too.

Answer 2

[dariober]

Maybe something along the lines of UpSetR would work?