GATK (Cannot find '.git' directory)

Question

[Abdul Rafay Khan]

Issue while Building GATK4

sudo ./gradlew bundle Starting a Gradle Daemon, 1 incompatible and 1 stopped Daemons could not be reused, use --status for details

FAILURE: Build failed with an exception.

Where: Build file '/home/rafay/gatk-4.0.2.0/build.gradle' line: 289

What went wrong: A problem occurred evaluating root project 'gatk'.

Cannot find '.git' directory

Try: Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. BUILD FAILED

[Kevin Blighe]

This is more suited to the GATK Forum, where you will likely get a rapid answer.

Also, please note that there have been issues with GitHub, generally, recently: Cannot Login via github