How to cluster single cell data using list of markers?

Question

[John]

Hi,

I have a (single cell)) RNA Seq data of Marker X expressed by 100 cells and also I have markers for its subgroups (Marker list-1,2,3,4,5). How can I subgroup them based on these marker's expression!

I ran RSEM and Have expected count,TPM,FPKM for all the 100 sequences!

Please help, Thanks!

[Tanvir Ahamed]

You can try SEURAT , MONOCLE. There could be much more awesome-single-cell