gtf file and rnaseq

Question

[qudrat]

Hello all I was wondering to ask whether there are any method to find common transcripts between two gtf file? I have produced gtf files from StringTie and I am interested in to proceed forward with common transcripts.

Answer 1

[Buffo]

You can also create the transcript (and quantification) list with ballgown, then compare the lists.

Answer 2

[ta_awwad]

you can do that simply using awk or fgrep