stringtie and fpkm and coverage
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6.7 years ago
qudrat ▴ 100

Hello all, I have assembled transcripts from a tissue using StringTie and I want to filter transcripts so that I can get rid of false positive results. What value should I consider fpkm or coverage and what should be minimum threshold?

RNA-Seq Assembly • 2.2k views
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You could adapt the ExN50 from Trinity.

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