Annovar coding_change error

Question

[er.doug.ragnar]

Hi I'm trying to use Annovar coding_change program but I keep getting syntax error, any idea why?

perl coding_change.pl S01.exonic_variant_function humandb/hg19_refGene.txt humandb/hg19_refGeneMrna.fa humandb/hg19_MT_ensGene.txt humandb/hg19_MT_ensGeneMrna.fa -out S01
Syntax error

Answer 1

[Kevin Blighe]

You're supplying too many parameters. You cannot have both of the following pairs of parameters:

• humandb/hg19_refGene.txt && humandb/hg19_refGeneMrna.fa
• humandb/hg19_MT_ensGene.txt && humandb/hg19_MT_ensGeneMrna.fa

You can only supply 1 pair of these per go.

Kevin