Network analysis of genes using R

Question

[jha.barkha8]

Is there a method or package in R to generate network or perform network analysis using R

[Diwan]

check igraph package Google gives many tutorials: http://kateto.net/networks-r-igraph http://statmath.wu.ac.at/research/friday/resources_WS0708_SS08/igraph.pdf

[zx8754]

Short answer "yes, there is method/package in R". Please improve your post by providing example input data, and expected output.

Answer 1

[Kevin Blighe]

My tutorial appears to be a perfect fit: Network plot from expression data in R using igraph

If you already have your own data matrix, then start from Step 2

Kevin

Answer 2

[russhh]

igraph, tidygraph, wgcna, ... There's a few others mentioned in the graphical models Task view.