Entering edit mode
7.1 years ago
kulani.s91
•
0
GENE_ID X53 X54 X56 X57
ALK 0 0 1 1
APC 0 0 0 0
AR 2 2 0 2
ASXL1 0 1 -1 0
ATRX 0 -1 1 -1
I have the dataset above. I used the R code
> test <- read.table("test.csv", sep=",", header = TRUE, fill = TRUE)
> test <- as.matrix(test)
> apres5 <- apcluster(negDistMat(r=2), test, q=0, details=TRUE)
> plot(apres5, test)
> heatmap(apres5)
I get the following error when I run the code
> plot(apres5, test)
Error in .local(x, y, ...) : cannot plot more than 15 features at once
> heatmap(apres5)
Error in rep(sideColors, sapply(x@clusters[[x@maxNoClusters]][srtIndex], :
invalid 'times' argument
In addition: Warning message:
In .local(s, x, ...) : there is nothing to cluster
Any idea how to resolve this?