Question

Cytoscape : how to color same nodes with several colors ?

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6.7 years ago

ZheFrench ▴ 590

Cytoscape : how to color same nodes with several colors ? An example here in figure E :

Cytoscape • 6.0k views

ADD COMMENT • link updated 6.6 years ago by scooter ▴ 620 • written 6.7 years ago by ZheFrench ▴ 590

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MultiColoredNodes Plugin for Cytoscape

ADD REPLY • link 6.7 years ago by Buffo ★ 2.4k

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not working with cytoscape 3.6.1 Jar is downloaded from the link but not automatically installed.

ADD REPLY • link 6.7 years ago by ZheFrench ▴ 590

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From Cytoscape, follow these steps:

Apps + App Manager + Install from file + Select it + Install it + Enjoy it :)

ADD REPLY • link 6.7 years ago by Buffo ★ 2.4k

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Alreardy tried. No worked saying Jar is missing value from Cytoscape-App in its manifest file.

ADD REPLY • link 6.7 years ago by ZheFrench ▴ 590

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As far as I know, this is a plugin for Cytoscape 2.x.

ADD REPLY • link 6.7 years ago by Jean-Karim Heriche 27k

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You can use the enhancedGraphics app for this, which does work with 3.x

ADD REPLY • link 6.6 years ago by scooter ▴ 620

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The alternative would be to use R and the igraph package with pie charts as nodes.

ADD REPLY • link 6.7 years ago by Jean-Karim Heriche 27k

score 2 · Answer 1 · 2018-04-05

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6.6 years ago

scooter ▴ 620

Sorry -- this should have been an answer, not a comment. You can use the enhancedGraphics app for this, which works fine in 3.x. The app store points to documentation on how to set things up.

ADD COMMENT • link 6.6 years ago by scooter ▴ 620