how to convert SGD standard name to SGD systematic ID?

Question

[bxia]

does SGD have a table to map theses two names?

I didn't find one in their download database..

[Ram]

Please avoid abbreviations which may be common in your subfield but not for all of us.

[GenoMax]

SGD = Saccharomyces Genome Database

@bxia - Have you looked in the downloads section of SGD? Provide an example or two if this does not help.

[bxia]

Yes, for example,

I have a gene name, RPL7B, which I can find the SGD systematic id by search in there website as YPL198W

But I can't find a file containing theses two kinds of IDs in downloads section of SGD.

Have anyone known the table download info in SGD database?

Thanks,

Answer 1

[GenoMax]

Get this features file.

$ grep RPL7B SGD_features.tab 
S000006119      ORF     Verified        YPL198W RPL7B   uL30|ribosomal 60S subunit protein L7B|YL8|L7B|L6B|L30|rp11     chromosome 16   L000003304      16173152  174702  W               2011-02-03      1996-07-31      Ribosomal 60S subunit protein L7B; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; contains a conserved C-terminal Nucleic acid Binding Domain (ND
B2); binds to Domain II of 25S and 5.8S rRNAs; homologous to mammalian ribosomal protein L7 and bacterial L30; RPL7B has a paralog, RPL7A, that arose from the whole genome duplication
S000006118      ORF     Dubious YPL197C                 chromosome 16           16      174756  174343  C               2011-02-03      1996-07-31      Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the r
ibosomal gene RPL7B
S000003044      ORF     Verified        YGL076C RPL7A   uL30|ribosomal 60S subunit protein L7A|YL8|L7A|L6A|L30|rp11     chromosome 7    L000002704|L000003255     7       365996  364335  C               2011-02-03      1996-07-31      Ribosomal 60S subunit protein L7A; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; contains a conserved C-terminal Nucleic acid Bi
nding Domain (NDB2); binds to Domain II of 25S and 5.8S rRNAs; homologous to mammalian ribosomal protein L7 and bacterial L30; RPL7A has a paralog, RPL7B, that arose from the whole genome duplication