Errors While Running Rosetta

Question

[Priya]

Hi all

We tried running rosetta predction for a membrane protein. While doing so we encountered the following error:

[root@localhost membrane_abinitio]# octopus2span.pl best1.octopus bash: octopus2span.pl: command not found

can anyone say how to rectify this error?

regards priya

[Michael Schubert]

priya, as Michael solved your problem (judging from your follow-up question), please accept the answer by clicking on the checkmark next to it.

Answer 1

[Michael Kuhn]

Try: ./octopus2span.pl best1.octopus

Commands that are in your current directory need to be explicitly marked with ./ so that nothing goes wrong if you have a command named ls or cd in your current directory.

Also: It is generally a good idea to only use root access when strictly necessary, as a normal user cannot mess up things outside their home directory.

[Michael Schubert]

Alternative: $ perl octopus2span.pl best1.octopus

Answer 2

[Thomas Schubaltz]

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