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6.6 years ago
7ejoseph
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20
Has anyone compiled a list of files I should maintain after running a masurca assembly?
I plan to keep the contigs and scaffolds from the final directory. Anything else I should keep? Logs, super reads?
I am writing a shell script to do a clean up once the assembly has finished.
Thank you.
There was a post about that:
Masurca disk space issue
This link below may also be helpful:
https://nanoporetech.com/events/knowledge-exchange-de-novo-assembly-masurca-using-minion-long-reads
See ASSEMBLY RESULT here:
ftp://ftp.genome.umd.edu/pub/MaSuRCA/MaSuRCA_QuickStartGuide.pdf