What tools I should use to make such a bioinformatic picture?

Question

[younglin113]

I saw this picture in an article, and I really want to know how can I learn to make this . I will be really thankful if you can help me! here is the picture:

[Pierre Lindenbaum]

see

• Help with Creating Gene Diagram for Research Article
• How to draw the picture of epigenetics & functional genome
• Which Software Can Make This Kind Of Figure? Thanks
• Genome Browser Figure
• How Was This Genomic Region Mapping Image Plotted?
• Simple Way To Graph A Gene Showing Putative Promotor Region, Utr, Introns And Exons

etc...
etc...

[Devon Ryan]

Can you update the link? I get a "bad gateway" error.

[h.mon]

Currently, the picture is just 130x105 pixels, I can't see any details.

[GenoMax]

younglin113 : To add an in-line image to your post

Using Markdown syntax.

Upload your image:

1. Pick a free image upload site. I'd recommend imgbb (accessible in most countries) or cubeupload (easier to use)

2. Upload your image on the site

Markdown method

• Get the direct URL to the image. To do this, you'll need to right click on the uploaded image and choose "Copy Image Address" or an equivalent option.

  On cubeupload, simply copy the first link under the uploaded image

• Click on the image option on the biostar edit toolbar (highlighted in red below), and paste the copied URL in the dialog box.

  

[younglin113]

sorry for the unsharp picture I've posted , I am a new here, thanks for your help. And here is the new address of this picture, thanks!! https://ibb.co/nceB6c

[GenoMax]

I have added this image to the original post.

Please use ADD REPLY/ADD COMMENT when responding to existing posts to keep threads logically organized.

[Kevin Blighe]

That's just a UCSC Genome Browser screen capture, with custom tracks added for ChIP signals (smooth-logged, it appears), and existing gene annotation tracks edited to have different color.

Take a look here: A: Visualization for ChIP-seq analysis

Answer 1

[bernatgel]

You can create images like that with karyoploteR, an R/Bioconductor package.

In the karyoploteR tutorial page you can find the step-by-step explanation plus code to create a somewhat similar image and from there you can modify sizes, colors and data to get what you need.