how to retrieve sequences from genome

Question

[bisht20diksha]

Hello

I have a sequenced genome for my sample. Also for some genes i have chromosome start and end. Now i want to retrieve these sequences from genome? How can i retrieve these sequences from the sequenced genome?

[reza]

you can use extractseq in EMBOSS

Answer 1

[WouterDeCoster]

This sounds like a job for bedtools getfasta